Найдено научных статей и публикаций: 3, для научной тематики: Molecular dynamics
1.
L.I. Kozlovskaya, D.I. Osolodkin, A.S. Shevtsova, L.Iu. Romanova, Y.V. Rogova, T.I. Dzhivanian, V.N. Lyapustin, G.P. Pivanova, A.P. Gmyl, V.A. Palyulin and G.G. Karganova
- Virology , 2010
Previously different authors described various flavivirus mutants with high affinity to cell glycosaminoglycans and low neuroinvasiveness in mice that were obtained consequently passages in cell cultures or in ticks. In present study the analysis of TBEV isolates has shown existence of GAG-binding v...
Previously different authors described various flavivirus mutants with high affinity to cell glycosaminoglycans and low neuroinvasiveness in mice that were obtained consequently passages in cell cultures or in ticks. In present study the analysis of TBEV isolates has shown existence of GAG-binding variants in natural virus population. Affinity to GAG has been evaluated by sorption on heparin-Sepharose. GAG-binding phenotype corresponds to such virus properties, like small plaque phenotype in PEK cells, absence of hemagglutination at pH 6.4, and low neuroinvasiveness in mice. Mutations increasing charge of E protein were necessary but not sufficient for acquisition of GAG-binding phenotype. Molecular modeling and molecular dynamics simulation have shown that the flexibility of E protein molecule could bear influence on the phenotypic manifestation of substitutions increasing charge of the virions.
2.
R.M. Khusnutdinoff, A.V. Mokshin and R.M. Yulmetyev
- JETP, Volume 108, Number 3, 417-427 (2009) , 2009
The molecular dynamics of liquid lead is simulated at T = 613 K using the following three models of an interparticle interaction potential: the Dzugutov pair potential and two multiparticle potentials (the “glue” potential and the Gupta potential). One of the purposes of this work is to determine th...
The molecular dynamics of liquid lead is simulated at T = 613 K using the following three models of an interparticle interaction potential: the Dzugutov pair potential and two multiparticle potentials (the “glue” potential and the Gupta potential). One of the purposes of this work is to determine the optimal model potential of the interatomic interaction in liquid lead. The calculated structural static and dynamic characteristics are compared with the experimental data on X-ray and neutron scattering. On the whole, all three model potentials adequately reproduce the experimental data. The calculations using the Dzugutov pair potential are found to reproduce the structural properties and dynamics of liquid lead on the nanoscale best of all. The role of a multiparticle contribution to the glue and Gupta potentials is studied, and its effect on the dynamic properties of liquid lead in nanoregions is revealed. In particular, the neglect of this contribution is shown to noticeably decrease the acoustic-mode frequency.
3.
Mokshin A.V., Yulmetyev R.M., Khusnutdinoff R.M. and H\"anggi P.
- J. Phys.: Condens. Matter 19, 2007, 046209 (1-16) , 2007
With this work we study the microscopic dynamics of liquid aluminium at T=973K and develop the theoretical model which satisfies all corresponding sum rules. The investigation covers
the inelastic features as well as the crossover of our theory into the hydrodynamical and the free-particle regimes....
With this work we study the microscopic dynamics of liquid aluminium at T=973K and develop the theoretical model which satisfies all corresponding sum rules. The investigation covers
the inelastic features as well as the crossover of our theory into the hydrodynamical and the free-particle regimes. A comparison between our results with those following from generalized
hydrodynamical approaches is also presented. The main results describe (i) the inherent relation of the high-frequency collective excitations observed in experimental spectra of dynamic structure factor $S(k,\omega)$ with the two-, three- and four-particle correlations, and (ii) the pronounced influence of the screening of the electron gas for the high-frequency collective dynamics.