Найдено научных статей и публикаций: 14, для научной тематики: EPR
1.
O.M. Usov, P.S.-T. Choi, J.P. Shapleigh, C.P. Scholes
- Journal of the American Chemical Society , 2005
The electronic structure of the 5-coordinate quantum-mechanically mixed-spin (sextet-quartet) heme center in cytochrome c‘ was investigated by electron nuclear double resonance (ENDOR), a technique not previously applied to this mixed-spin system. Cytochrome c‘ was obtained from overexpressing varia...
The electronic structure of the 5-coordinate quantum-mechanically mixed-spin (sextet-quartet) heme center in cytochrome c‘ was investigated by electron nuclear double resonance (ENDOR), a technique not previously applied to this mixed-spin system. Cytochrome c‘ was obtained from overexpressing variants of Rhodobacter sphaeroides 2.4.3. ENDOR for this study was done at the g|| = 2.00 extremum where single-crystal-like, well-resolved spectra prevail. The heme meso protons of cytochrome c‘ showed a contact interaction that implied spin delocalization arising from the heme (dz2) orbital enhanced by iron out-of-planarity. An exchangeable proton ENDOR feature appeared from the proximal His123 Nδ hydrogen. This Nδ hydrogen, which crystallographically has no hydrogen-bonding partner and thus belongs to a neutral imidazole, showed a larger hyperfine coupling than the corresponding hydrogen-bonded Nδ proton from metmyoglobin. The unique residue Phe14 occludes binding of a sixth ligand in cytochrome c‘, and ENDOR from a proton of the functionally important Phe14 ring, 3.3 Å away from the heme iron, was detected. ENDOR of the nitrogen ligand hyperfine structure is a direct probe into the σ-antibonding (dz2) and (dx2-y2) orbitals whose energies alter the relative stability and admixture of sextet and quartet states and whose electronic details were thus elucidated. ENDOR frequencies showed for cytochrome c‘ larger hyperfine couplings to the histidine nitrogen and smaller hyperfine couplings to the heme nitrogens than for high-spin ferric hemes. Both of these findings followed from the mixed-spin ground state, which has less (dx2-y2) character than have fully high-spin ferric heme systems.
JACS, 2005, V.127, No.26, pp.9485-9494
2.
R.M. Burger, O.M. Usov, V.M. Grigoryants, C.P. Scholes
- Journal of Physical Chemistry B , 2006
Activated bleomycin (ABLM) is a drug−Fe(III)−hydroperoxide complex kinetically competent in DNA attack (via H4‘ abstraction). This intermediate is relatively stable, but its spontaneous conversion to ferric bleomycin (Fe(III)·BLM) is poorly characterized because no observable intermediate product ac...
Activated bleomycin (ABLM) is a drug−Fe(III)−hydroperoxide complex kinetically competent in DNA attack (via H4‘ abstraction). This intermediate is relatively stable, but its spontaneous conversion to ferric bleomycin (Fe(III)·BLM) is poorly characterized because no observable intermediate product accumulates. Light was shown to trigger ABLM attack on DNA in liquid at −30 °C, so ABLM was irradiated (at its 350 nm ligand-to-metal charge-transfer transition) at 77 K to stabilize possible intermediates. ABLM photolysis (quantum yield, Φ = 0.005) generates two kinds of product: Fe(III)·BLM (with no detectable intermediate) and one or more minor (1−2%) radical O−Fe−BLM byproduct, photostable at 77 K. Adding DNA, even without its target H4‘, increases the quantum yield of ABLM conversion >10-fold while suppressing the observed radical yield. Since cryogenic solid-phase reactions can entail only constrained local rearrangement, the reaction(s) converting ABLM to Fe(III)·BLM must be similarly constrained.
J.Phys.Chem. B, 2006, V.110, No.41, pp. 20702-20709
3.
O.M. Usov, Y. Sun, V.M. Grigoryants, J.P. Shapleigh, C.P. Scholes
- Journal of the American Chemical Society , 2011
With limited reductant and nitrite under anaerobic conditions, copper-containing nitrite reductase (NiR) of Rhodobacter sphaeroides yielded endogenous NO and the Cu(I)NO derivative of NiR. 14N- and 15N-nitrite substrates gave rise to characteristic 14NO and 15NO EPR hyperfine features indicating NO ...
With limited reductant and nitrite under anaerobic conditions, copper-containing nitrite reductase (NiR) of Rhodobacter sphaeroides yielded endogenous NO and the Cu(I)NO derivative of NiR. 14N- and 15N-nitrite substrates gave rise to characteristic 14NO and 15NO EPR hyperfine features indicating NO involvement, and enrichment of NiR with 63Cu isotope caused an EPR line shape change showing copper involvement. A markedly similar Cu(I)NONiR complex was made by anaerobically adding a little endogenous NO gas to reduced protein and immediately freezing. The Cu(I)NONiR signal accounted for 60−90% of the integrated EPR intensity formerly associated with the Type 2 catalytic copper. Analysis of NO and Cu hyperfine couplings and comparison to couplings of inorganic Cu(I)NO model systems indicated 50% spin on the N of NO and 17% spin on Cu. ENDOR revealed weak nitrogen hyperfine coupling to one or more likely histidine ligands of copper. Although previous crystallography of the conservative I289V mutant had shown no structural change beyond the 289 position, this mutation, which eliminates the Cδ1 methyl of I289, caused the Cu(I)NONiR EPR spectrum to change and proton ENDOR features to be significantly altered. The proton hyperfine coupling that was significantly altered was consistent with a dipolar interaction between the Cδ1 protons of I289 and electron spin on the NO, where the NO would be located 3.0−3.7 Å from these protons. Such a distance positions the NO of Cu(I)NO as an axial ligand to Type 2 Cu(I).
JACS, 2006, V.128, No. 40. pp.13102-13111
4.
O.M. Usov, V.M. Grigoryants, R. Tagore, G.W. Brudvig, C.P. Scholes
- Journal of the American Chemical Society , 2007
Di-μ-oxo MnIII−MnIV dimers are models for coupled, mixed-valence manganese in the oxygen-evolving centers of green plants. Using a recently reported method of exchanging water oxygen into the di-μ-oxo cross-bridges , we have incorporated 17O into the μ-oxo cross bridges of the MnIII−MnIV bipyridyl d...
Di-μ-oxo MnIII−MnIV dimers are models for coupled, mixed-valence manganese in the oxygen-evolving centers of green plants. Using a recently reported method of exchanging water oxygen into the di-μ-oxo cross-bridges , we have incorporated 17O into the μ-oxo cross bridges of the MnIII−MnIV bipyridyl dimer for study of oxygen electron-spin hyperfine couplings by electron paramagnetic resonance (EPR) and electron nuclear double resonance (ENDOR). The ENDOR evidence was for a di-μ-oxo 17O hyperfine coupling of 12.8 ± 1.0 MHz. Narrow and highly resolved EPR features from dimers exchanged with H216O (I = 0) became broadened when the dimer was prepared by exchanging the cross bridging oxygens with H217O (I = 5/2). The EPR broadening due to 17O was quantitatively reproduced by a model where the dimer has two equivalent di-μ-oxo cross-bridging 17Ο, and the 17O hyperfine coupling was highly consistent with that determined by ENDOR. This work explicitly points out evidence for covalent spin transfer to the cross-bridging di-μ-oxo oxygens which provide chemical bonds and antiferromagentic coupling between the mixed-valence manganese centers.
JACS, 2007. V.129, No.39, pp. 11886-11887.
5.
S. Ghosh, A. Dey, O.M. Usov, Y. Sun, V.M. Grigoryants, C.P. Scholes, E.I. Solomon
- Journal of the American Chemical Society , 2007
Copper nitrite reductase contains a T1 and T2 Cu center and catalyzes the one electron reduction of nitrite to NO. This study determines that reaction of the reduced enzyme with excess NO generates the T1 reduced T2 oxidized-nitrite bound form and not the η2-NO·Cu+ species observed in the crystal st...
Copper nitrite reductase contains a T1 and T2 Cu center and catalyzes the one electron reduction of nitrite to NO. This study determines that reaction of the reduced enzyme with excess NO generates the T1 reduced T2 oxidized-nitrite bound form and not the η2-NO·Cu+ species observed in the crystal structure. Reaction intermediates have been trapped and N2O gas detected during this reaction, allowing elucidation of the mechanism by which both the T2 and NO are oxidized by the reaction of NO with the fully reduced enzyme. Density functional theory calculations provide insight into factors which favor the η2-NO·Cu+ complex in the crystal structure.
JACS, 2007, v. 129, No.34, pp. 10310-10311
6.
B. Lee, O.M. Usov, V.M. Grigoryants, W.K. Myers, J. P. Shapleigh, C.P. Scholes
- Biochemistry , 2009
Cytochrome c' is a heme protein from a denitrifying variant of Rhodobacter sphaeroides which may serve to store and transport metabolic NO while protecting against NO toxicity. Its heme site bears resemblance through its 5-coordinate NO-binding capability to the regulatory site in soluble guanylate ...
Cytochrome c' is a heme protein from a denitrifying variant of Rhodobacter sphaeroides which may serve to store and transport metabolic NO while protecting against NO toxicity. Its heme site bears resemblance through its 5-coordinate NO-binding capability to the regulatory site in soluble guanylate cyclase.Aconserved arginine (Arg-127) abuts the 5-coordinate NO-heme binding site, and the alanine mutant R127A provided insight into the role of the Arg-127 in establishing the electronic structure of the heme-NO complex and in modifying the heme-centered redox potential and NO-binding affinity. By comparison to R127A, the wild-type Arg-127 was determined to increase the heme redox potential, diminish the NO-binding affinity, perturb and diminish the 14NO hyperfine coupling determined by ENDOR (electron nuclear double resonance), and increase the maximal electronic g-value. The larger isotropic NO hyperfine and the smaller
maximal g-value of the R127A mutant together predicted that the Fe-N-O bond angle in the mutant is larger than that of the Arg-127-containing wild-type protein. Deuterium ENDOR provided evidence for exchangeable H/D consistent with hydrogen bonding of Arg-127, but not Ala-127, to theOof the NO. Proton ENDOR features previously assigned to Phe-14 on the distal side of the heme were unperturbed by the proximal side R127A mutation, implying the localized nature of that mutational perturbation at the proximal, NO-binding side of the heme. From this work two functions of positively charged Arg-127 emerged: the first was to maintain the KD of the cytochrome c' in the 1 μM range, and the second was to provide a redox potential that enhances the stability of the ferrous heme.
Biochemistry, 2009, v.48, No. 38, pp. 8985–8993
7.
E. N. Kalabukhova, S. N. Lukin, D. V. Savchenko, B. D. Shanina, A. V. Vasin, V. S. Lysenko, A. N. Nazarov, A. V. Rusavsky, J. Hoentsch, Y. Koshka
- Physical Review B , 2010
Three paramagnetic defects were revealed in amorphous hydrogenated carbon-rich silicon-carbon alloy films a-Si0.3C0.7:H. Two of them were attributed to silicon Si dangling bonds Si DBs and carbon-related defects CRDs. The third defect, based on its g-value and linewidth, was tentatively attrib...
Three paramagnetic defects were revealed in amorphous hydrogenated carbon-rich silicon-carbon alloy films a-Si0.3C0.7:H. Two of them were attributed to silicon Si dangling bonds Si DBs and carbon-related defects CRDs. The third defect, based on its g-value and linewidth, was tentatively attributed to a bulk Si DB defect
bonded with nitrogen atoms in Si-N2Si configuration. The effect of thermal vacuum annealing on the properties of the a-Si0.3C0.7 :H films was studied in the temperature range of Tann=400–950 °C. A strong increase in CRD concentration was observed in high temperature annealed a-Si0.3C0.7 :H films, which was explained by hydrogen effusion process occurred at Tann above 400 °C. The increase in the concentration of the CRDs is accompanied by the exchange narrowing of its electron paramagnetic resonance EPR linewidth due to the
formation of carbon clusters having ferromagnetic ordering. The temperature dependent g-factor anisotropies observed at Q-band and D-band frequencies for the CRD signal in the samples annealed at high temperature 950 °C were explained by the presence of graphitelike sp2-coordinated carbon clusters and demagnetization
field shape-dependent anisotropy term. The demagnetizing field Bdem=−4Ms, where Ms is the sample magnetization, was found to be equal to 0.44 mT at 37 GHz and 1.1 mT at 140 GHz. Analysis of the temperature dependences of the integral intensities of the SiDB and CRD EPR signals has shown that they do not obey the Curie-Weiss law, and their spin systems exhibit superparamagnetic and ferromagnetic properties, respectively.
8.
D.V. Savchenko, E.N. Kalabukhova, , S.N. Lukin, E.N. Mokhov, J. Hoentsch, A. Pöppl
- Physica B , 2009
D-band EPR, X-band FS ESE and pulsed ENDOR studies of the additional nitrogen (N) related centers
observed in highly compensated n-type 6H-SiC wafers are presented. The D-band EPR and X-band FS
ESE spectrum consists of the 14N hyperfine (hf) triplet lines of the N donors incorporated at the two
q...
D-band EPR, X-band FS ESE and pulsed ENDOR studies of the additional nitrogen (N) related centers
observed in highly compensated n-type 6H-SiC wafers are presented. The D-band EPR and X-band FS
ESE spectrum consists of the 14N hyperfine (hf) triplet lines of the N donors incorporated at the two
quasi-cubic (Nc1, Nc2) sites with the intensity ratio of INc1/INc2 ¼ 0.7 and three additional triplet lines.
X-band pulsed ENDOR spectra have shown intense 14N ENDOR signals of Nc1, Nc2 centers and new 14N
lines due to the N related centers N1, N2, N3 with the isotropic hf splitting: 21.04, 26.43, 29.77MHz,
respectively. It was found that the g-tensors of the N2 and N3 triplet lines coincide with those of N on
quasi-cubic Nc2 site. The g-tensor of the third N1 triplet lines corresponds to the average value of the Nc1
and Nc2 spectrum: gðN1Þ 1
2½gðNc1Þ þ gðNc2Þ. It was suggested that N1 center with Aiso ¼ 21.04MHz is
due to the spin coupling between N on two quasi-cubic Nc1 and Nc2 sites while two others are
tentatively attributed to the N pairs formed between N atoms on one quasi-cubic Nc2 site.
9.
Savchenko D., Kassiba A.., Ogurtsov N., Errien N., Makoswka-Janusik M., Pud A., Kodjikian S., Oueriagli A.
- IEEE Conference Proceeding: ICTON Mediterranean Winter Conference (Angers, France, December 10-12), 2009. ICTON-MW 2009. 3rd , 2010
Electron paramagnetic resonance (EPR) investigations were carried out on hybrid Core-Shell nanomaterials
associating silicon carbide nanoparticles and conducting polyaniline. The performed experiments compare the
paramagnetic centres, the electronic transport features and the interface effects in ...
Electron paramagnetic resonance (EPR) investigations were carried out on hybrid Core-Shell nanomaterials
associating silicon carbide nanoparticles and conducting polyaniline. The performed experiments compare the
paramagnetic centres, the electronic transport features and the interface effects in two classes of materials, bare
polymers and core-shell nanocomposites. By EPR, large doping rates were demonstrated in the bare doped
polymers through important saturation phenomena which alter significantly the EPR spectrum features.
Furthermore, memory effects were involved in the bare doped polymer with regard to the EPR spectrum features
depending on the conditions of its thermal treatments. In the hybrid core-shell nanocomposites nor such
saturation and nor memory effects were found on the EPR signals even if similar paramagnetic centres exist in
both classes of samples. These behaviors were discussed taking into account the thermal stability and the doping
efficiency in the considered classes of materials. Optimal doping levels were then realized and their effects on
the polymers and the nanocomposites were clarified by using EPR and DRS (dielectric relaxation spectroscopy)
measurements. Also, it is demonstrated that the charge carriers consist in polarons in the nanocomposites while
bipolarons contributions dominate the electrical conductivity in the bare doped polymers
10.
D.V. Savchenko, A. Pöppl, E.N. Kalabukhova, E.F. Venger, M.P. Gadzira, G.G. Gnesin
- Semiconductor Physics, Quantum Electronics & Optoelectronics , 2010
Nonstoichiometric b-SiC nanoparticles (np-SiC) have been studied by electron
paramagnetic resonance (EPR) and pulsed magnetic resonance methods including field
swept electron spin echo (FS ESE), pulsed electron nuclear double resonance (ENDOR)
and hyperfine sublevel correlation spectroscopy (HYSC...
Nonstoichiometric b-SiC nanoparticles (np-SiC) have been studied by electron
paramagnetic resonance (EPR) and pulsed magnetic resonance methods including field
swept electron spin echo (FS ESE), pulsed electron nuclear double resonance (ENDOR)
and hyperfine sublevel correlation spectroscopy (HYSCORE). Four ESE signals related
to the paramagnetic centers labeled D1, D2, D3, D4 with g = 2.0043, g = 2.0029,
g = 2.0031, g = 2.0037 were resolved in FS ESE spectrum due to their different spin
relaxation times. As deduced from the study of the superhyperfine structure of the D2
defect by FS ESE, pulse ENDOR and HYSCORE methods the dominant paramagnetic
center is a carbon vacancy (VC) localized in b-SiC crystalline phase of the np-SiC. The
parameters of the D2 center coincide with those found for the VC in np-SiC obtained by
laser pyrolysis method. Three other defects were identified by comparison of their EPR
parameters with the microstructure of the np-SiC. The D1 defect was attributed to the VC
vacancy located in b-SiC crystalline phase. The D3 defect is identified with the carbon
dangling bonds located in the carbon excess phase. The D4 defect was assigned to a
threefold-coordinated Si atom bonded with one nitrogen atom, resulting in the formation
of the local bonding Si-Si2N configuration in a-Si3N4 phase.